- Class: 2
- Architecture: 2.40:Beta Barrel
- Topology: 2.40.220:Intramolecular trans-sialidase; domain 3
- Homology: 2.40.220.10:Intramolecular Trans-sialidase; Domain 3
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1sli | [A] | [A] | [A] | 2 | DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID | |||
1sll | [A] | [A] | [A] | 2 | ||||
2bf6 | [A] | [A] | [A] | 0.97 | CA:CALCIUM ION GOL:GLYCEROL SIA:N-ACETYL-ALPHA-NEURAMINIC ACID | |||
2jkb | [A] | [A] | [A] | 1.54 | EDO:1,2-ETHANEDIOL SKD:2-ACETYLAMINO-7-(1,2-DIHYDROXY-ETHYL)-3-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCTANE-5-CARBOXYLIC ACID | |||
2sli | [A] | [A] | [A] | 1.8 | SKD:2-ACETYLAMINO-7-(1,2-DIHYDROXY-ETHYL)-3-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCTANE-5-CARBOXYLIC ACID | |||
2vk5 | [A] | [A] | [A] | 0.97 | CA:CALCIUM ION GOL:GLYCEROL | |||
2vk6 | [A] | [A] | [A] | 1.5 | CA:CALCIUM ION DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID MG:MAGNESIUM ION PG4:TETRAETHYLENE GLYCOL | |||
2vk7 | [A] | [A] | [A] | 1.2 | CA:CALCIUM ION FSI:5-ACETAMIDO-3,5-DIDEOXY-3-FLUORO-D-ERYTHRO-ALPHA-L-MANNO-NON-2-ULOPYRANOSONIC ACID | |||
2vvz | [A2] | [A2] | [A2] | 2.5 | CL:CHLORIDE ION DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID | |||
2vw0 | [A] | [A] | [A] | 2.3 | GOL:GLYCEROL | |||
2vw1 | [A] | [A] | [A] | 2.39 | DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID GOL:GLYCEROL | |||
2vw2 | [A] | [A] | [A] | 1.7 | GOL:GLYCEROL NHE:2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID | |||
2w20 | [A] | [A] | [A] | 1.49 | CL:CHLORIDE ION GOL:GLYCEROL MES:2-(N-MORPHOLINO)-ETHANESULFONIC ACID | |||
2ya4 | [A2] | [A2] | [A2] | 1.8 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL FMT:FORMIC ACID | |||
2ya5 | [A2] | [A2] | [A2] | 2 | CL:CHLORIDE ION FMT:FORMIC ACID SIA:N-ACETYL-ALPHA-NEURAMINIC ACID | |||
2ya6 | [A2] | [A2] | [A2] | 2 | CL:CHLORIDE ION DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID FMT:FORMIC ACID | |||
2ya7 | [A2] | [A2] | [A2] | 1.89 | CL:CHLORIDE ION ZMR:ZANAMIVIR | |||
2ya8 | [A2] | [A2] | [A2] | 1.75 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL FMT:FORMIC ACID G39:(3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID | |||
3h71 | [A] | [A] | [A] | 1.7 | MSE:SELENOMETHIONINE | |||
3h72 | [A] | [A] | [A] | 1.7 | SIA:N-ACETYL-ALPHA-NEURAMINIC ACID | |||
3h73 | [A] | [A] | [A] | 1.7 | DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID | |||
3sli | [A] | [A] | [A] | 1.8 | SKD:2-ACETYLAMINO-7-(1,2-DIHYDROXY-ETHYL)-3-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCTANE-5-CARBOXYLIC ACID | |||
4foq | [A] | [A] | [A] | 1.99 | DMS:DIMETHYL SULFOXIDE TAU:2-AMINOETHANESULFONIC ACID | |||
4fov | [A] | [A] | [A] | 2.29 | CXS:3-CYCLOHEXYL-1-PROPYLSULFONIC ACID DMS:DIMETHYL SULFOXIDE | |||
4fow | [A] | [A] | [A] | 2.1 | A20:3-AMINOPROPANE-1-SULFONIC ACID DMS:DIMETHYL SULFOXIDE | |||
4foy | [A] | [A] | [A] | 1.84 | D53:2-(BENZYLAMINO)ETHANESULFONIC ACID DMS:DIMETHYL SULFOXIDE | |||
4fp2 | [A] | [A] | [A] | 2.05 | IJ6:2-[(CYCLOHEXYLMETHYL)AMINO]ETHANESULFONIC ACID | |||
4fp3 | [A] | [A] | [A] | 2.74 | IJ2:2-[(FURAN-2-YLMETHYL)AMINO]ETHANESULFONIC ACID | |||
4fpc | [A] | [A] | [A] | 2.32 | GOL:GLYCEROL MFY:2-[(4-CHLOROBENZYL)AMINO]ETHANESULFONIC ACID | |||
4fpe | [A] | [A] | [A] | 2.18 | 0H9:2-[(4-METHOXYBENZYL)AMINO]ETHANESULFONIC ACID DMS:DIMETHYL SULFOXIDE | |||
4fpf | [A] | [A] | [A] | 2.23 | DMS:DIMETHYL SULFOXIDE JKK:2-[(3-CHLOROBENZYL)AMINO]ETHANESULFONIC ACID | |||
4fpg | [A] | [A] | [A] | 2.58 | DMS:DIMETHYL SULFOXIDE IH9:2-[(3-HYDROXYBENZYL)AMINO]ETHANESULFONIC ACID | |||
4fph | [A] | [A] | [A] | 1.94 | 0V7:2-[(3-FLUOROBENZYL)AMINO]ETHANESULFONIC ACID DMS:DIMETHYL SULFOXIDE | |||
4fpj | [A] | [A] | [A] | 1.98 | D8I:2-[(3-METHOXYBENZYL)AMINO]ETHANESULFONIC ACID DMS:DIMETHYL SULFOXIDE | |||
4fpk | [A] | [A] | [A] | 2.4 | DMS:DIMETHYL SULFOXIDE IJ1:2-[(3-METHYLBENZYL)AMINO]ETHANESULFONIC ACID | |||
4fpl | [A] | [A] | [A] | 2.1 | 7HV:2-[(3,4-DICHLOROBENZYL)AMINO]ETHANESULFONIC ACID DMS:DIMETHYL SULFOXIDE | |||
4fpo | [A] | [A] | [A] | 2.59 | DMS:DIMETHYL SULFOXIDE LL9:2-[(3-CHLORO-4-METHOXYBENZYL)AMINO]ETHANESULFONIC ACID | |||
4fpy | [A] | [A] | [A] | 2.18 | 0V8:2-[(3-BROMOBENZYL)AMINO]ETHANESULFONIC ACID DMS:DIMETHYL SULFOXIDE | |||
4fq4 | [A] | [A] | [A] | 1.84 | DMS:DIMETHYL SULFOXIDE IJ4:2-[(4-FLUORO-3-METHYLBENZYL)AMINO]ETHANESULFONIC ACID | |||
4sli | [A] | [A] | [A] | 1.8 | CNP:2-PROPENYL-N-ACETYL-NEURAMINIC ACID | |||
4x47 | [A] | [A] | [A] | 2 | DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID PO4:PHOSPHATE ION | |||
4x49 | [A] | [A] | [A] | 2.01 | ACE:ACETYL GROUP CA:CALCIUM ION G39:(3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID GOL:GLYCEROL | |||
4x4a | [A] | [A] | [A] | 1.71 | ACE:ACETYL GROUP GOL:GLYCEROL PO4:PHOSPHATE ION SKD:2-ACETYLAMINO-7-(1,2-DIHYDROXY-ETHYL)-3-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCTANE-5-CARBOXYLIC ACID | |||
4x6k | [A] | [A] | [A] | 1.94 | 3XR:(2S,3R,4S,5S)-2-(ACETYLAMINO)-5-CARBOXY-3,4-DIHYDROXYPIPERIDINIUM ACE:ACETYL GROUP | |||
4xe9 | [A] | [A] | [A] | 1.84 | DMS:DIMETHYL SULFOXIDE OPX:(1S,3R,4S)-1-[(CYCLOHEXYLAMINO)METHYL]-3,4-DIHYDROXYCYCLOPENTANESULFONIC ACID | |||
4xhb | [A] | [A] | [A] | 1.88 | 17Y:(1R,2S)-CYCLOPENTANE-1,2-DIOL NHE:2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID | |||
4xhx | [A] | [A] | [A] | 2.1 | DMS:DIMETHYL SULFOXIDE JKK:2-[(3-CHLOROBENZYL)AMINO]ETHANESULFONIC ACID OPX:(1S,3R,4S)-1-[(CYCLOHEXYLAMINO)METHYL]-3,4-DIHYDROXYCYCLOPENTANESULFONIC ACID | |||
4xik | [A] | [A] | [A] | 1.91 | DMS:DIMETHYL SULFOXIDE | |||
4xil | [A] | [A] | [A] | 1.9 | OPX:(1S,3R,4S)-1-[(CYCLOHEXYLAMINO)METHYL]-3,4-DIHYDROXYCYCLOPENTANESULFONIC ACID | |||
4xio | [A] | [A] | [A] | 1.8 | ||||
4xj8 | [A] | [A] | [A] | 2.75 | ||||
4xj9 | [A] | [A] | [A] | 1.98 | DMS:DIMETHYL SULFOXIDE OPX:(1S,3R,4S)-1-[(CYCLOHEXYLAMINO)METHYL]-3,4-DIHYDROXYCYCLOPENTANESULFONIC ACID | |||
4xja | [A] | [A] | [A] | 1.98 | DMS:DIMETHYL SULFOXIDE OPX:(1S,3R,4S)-1-[(CYCLOHEXYLAMINO)METHYL]-3,4-DIHYDROXYCYCLOPENTANESULFONIC ACID PO4:PHOSPHATE ION SFJ:(2R,3R,4R,5R,6R)-5-ACETAMIDO-2,3-DIFLUORO-4-HYDROXY-6-[(1R,2R)-1,2,3-TRIHYDROXYPROPYL]TETRAHYDRO-2H-PYRAN-2-CARBOXYLIC ACID | |||
4xju | [A] | [A] | [A] | 1.94 | 19D:(1R,2R,3R,4R,5R,7R)-2-(ACETYLAMINO)-7-[(1R)-1,2-DIHYDROXYETHYL]-4-FLUORO-3-HYDROXY-6,8-DIOXABICYCLO[3.2.1]OCTANE-5-CARBOXYLIC ACID DMS:DIMETHYL SULFOXIDE PO4:PHOSPHATE ION | |||
4xjw | [A] | [A] | [A] | 1.53 | DMS:DIMETHYL SULFOXIDE OPX:(1S,3R,4S)-1-[(CYCLOHEXYLAMINO)METHYL]-3,4-DIHYDROXYCYCLOPENTANESULFONIC ACID PO4:PHOSPHATE ION | |||
4xjz | [A] | [A] | [A] | 1.56 | DMS:DIMETHYL SULFOXIDE PO4:PHOSPHATE ION | |||
4xma | [A] | [A] | [A] | 2.09 | DMS:DIMETHYL SULFOXIDE OPX:(1S,3R,4S)-1-[(CYCLOHEXYLAMINO)METHYL]-3,4-DIHYDROXYCYCLOPENTANESULFONIC ACID | |||
4xmi | [A] | [A] | [A] | 1.97 | DMS:DIMETHYL SULFOXIDE PO4:PHOSPHATE ION | |||
4xog | [A] | [A] | [A] | 2.09 | DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID DMS:DIMETHYL SULFOXIDE OPX:(1S,3R,4S)-1-[(CYCLOHEXYLAMINO)METHYL]-3,4-DIHYDROXYCYCLOPENTANESULFONIC ACID | |||
4xyx | [A] | [A] | [A] | 2.1 | 43Z:OPTACTAMIDE PO4:PHOSPHATE ION | |||
4yw1 | [A] | [A] | [A] | 2.25 | DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER PO4:PHOSPHATE ION SIA:N-ACETYL-ALPHA-NEURAMINIC ACID | |||
4yw2 | [A] | [A] | [A] | 2 | GAL:BETA-D-GALACTOPYRANOSE GOL:GLYCEROL PEG:DI(HYDROXYETHYL)ETHER PO4:PHOSPHATE ION SIA:N-ACETYL-ALPHA-NEURAMINIC ACID | |||
4yw3 | [A] | [A] | [A] | 2.05 | DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID GOL:GLYCEROL PO4:PHOSPHATE ION SIA:N-ACETYL-ALPHA-NEURAMINIC ACID | |||
4yw4 | [A] | [A] | [A] | 2.2 | GOL:GLYCEROL PO4:PHOSPHATE ION | |||
4yw5 | [A] | [A] | [A] | 2.3 | EDO:1,2-ETHANEDIOL G39:(3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID GOL:GLYCEROL | |||
4yz1 | [A] | [A] | [A] | 1.97 | SO4:SULFATE ION | |||
4yz2 | [A] | [A] | [A] | 2.06 | DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID SO4:SULFATE ION | |||
4yz3 | [A] | [A] | [A] | 2.38 | G39:(3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID SO4:SULFATE ION | |||
4yz4 | [A] | [A] | [A] | 2.15 | SIA:N-ACETYL-ALPHA-NEURAMINIC ACID SO4:SULFATE ION | |||
4yz5 | [A] | [A] | [A] | 2.27 | DAN:2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID GAL:BETA-D-GALACTOPYRANOSE GLC:ALPHA-D-GLUCOPYRANOSE SIA:N-ACETYL-ALPHA-NEURAMINIC ACID SO4:SULFATE ION | |||
5f9t | [A] | [A] | [A] | 2.05 | FSI:5-ACETAMIDO-3,5-DIDEOXY-3-FLUORO-D-ERYTHRO-ALPHA-L-MANNO-NON-2-ULOPYRANOSONIC ACID GOL:GLYCEROL SFJ:(2R,3R,4R,5R,6R)-5-ACETAMIDO-2,3-DIFLUORO-4-HYDROXY-6-[(1R,2R)-1,2,3-TRIHYDROXYPROPYL]TETRAHYDRO-2H-PYRAN-2-CARBOXYLIC ACID | |||
5kky | [A2] | [A2] | [A2] | 2.39 | 6UD:5-ACETAMIDO-2,6-ANHYDRO-3,5,9-TRIDEOXY-9-TRIAZAN-1-YL-D-GLYCERO-D-GALACTO-NON-2-ENONIC ACID CL:CHLORIDE ION | |||
5tsp | [A] | [A] | [A] | 1.24 | CA:CALCIUM ION NHE:2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA